About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6024745_6037227_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6024745 - 6037227
Intron Length:
12483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTGTGTTTTATG
Flanking Amino Acid:
VHMGASAQKQSTAEMPTTPK
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
78.3
0.64
1
73.7
40.9
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
48
-0.3
2.1
58.31
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026015
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041971
6020261 - 6051371
31111