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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6037523_6050367_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6037523 - 6050367
Intron Length:
12845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTGTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTA
Flanking Amino Acid:
TAPSMSDLARASSSKPELSS
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.9
0.65
0.9
78.2
35.7
Minor 5ss
38.9
-1.2
3
50.6
40.1
Minor BPS
73.2
0.72
1.5
82.59
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026015
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041971
6020261 - 6051371
31111