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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6075829_6080211_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6075829 - 6080211
Intron Length:
4383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAA
U12 Branch Point Sequence:
CCTGTCTGAAGT
Flanking Amino Acid:
MQVLSDVKAPCDALP
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
83.2
30.8
Major BPS
64.4
0.36
1.2
57.3
41.7
Major PPT
73.2
0.52
0.7
65.4
30.4
Minor 5ss
33.6
-1.9
3
41.3
45.3
Minor BPS
48
-0
1.9
63.41
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006398
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006655
6075813 - 6087326
11514