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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6080357_6081383_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6080357 - 6081383
Intron Length:
1027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTATATTTAATT
Flanking Amino Acid:
GTEMIITKSGRRMFPQCKIK
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.2
37.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.1
0.79
0.7
82.3
28.9
Minor 5ss
23.1
-3.1
3.2
29
43.5
Minor BPS
67
0.61
1.4
78.65
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006398
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006655
6075813 - 6087326
11514