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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6082576_6083103_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6082576 - 6083103
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTGT
5'SS Class:
major
3'SS Sequence:
CCTTTATTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TGGTCCTTTATT
Flanking Amino Acid:
TSVTAYQNEQITKLKIDNNP
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
63.9
42.9
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
75.3
0.57
1
79.2
32
Minor 5ss
36.7
-1.5
3.6
56
48.2
Minor BPS
68.7
0.67
1.6
80.7
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006398
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006655
6075813 - 6087326
11514