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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6106317_6115072_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6106317 - 6115072
Intron Length:
8756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
AYDKTALALEVGDIVKVTRM
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.4
0.75
0.8
77.7
36.2
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
CRKL
Ensembl Gene ID:
ENSAPLG00000006668
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006917
6106182 - 6119042
12861