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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6115530_6118728_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6115530 - 6118728
Intron Length:
3199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAAACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTTTAAACT
Flanking Amino Acid:
DTTTLIEPAPRYPSPPTGSG
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.8
0.51
0.9
72.2
37
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
66.6
0.6
1.7
82.56
39.6

Associated Gene:

Gene:
CRKL
Ensembl Gene ID:
ENSAPLG00000006668
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006917
6106182 - 6119042
12861