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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6124616_6126111_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6124616 - 6126111
Intron Length:
1496

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAT|GCAGACCGC
5'SS Class:
weak_major
3'SS Sequence:
ACCATCACATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
ATTACCATCACA
Flanking Amino Acid:
ETEKWFSEWHRDTLACYFRE
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.3
0.17
1.4
52.2
41.1
Major BPS
75.8
0.64
1
65.8
41
Major PPT
60
0.23
1
56.6
38
Minor 5ss
28.3
-2.5
4.3
44.8
43.9
Minor BPS
53.1
0.09
2.1
71.86
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006701
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047800
6124553 - 6128516
3964