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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6127711_6129106_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6127711 - 6129106
Intron Length:
1396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
CGTGGTGATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAA
U12 Branch Point Sequence:
CAGACCTCAACT
Flanking Amino Acid:
WEYVTPLKKEVYAHAGAALD
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
64.3
0.36
1
65.6
31.9
Major PPT
61.8
0.27
1.1
54
45
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
59
0.36
1.7
70.45
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006701
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006960
6126022 - 6133655
7634