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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6130376_6130441_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6130376 - 6130441
Intron Length:
66

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
CTGAGTCAGTAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CATCTCTGAGTC
Flanking Amino Acid:
SGFRAESRCWSCLCSPYAYL
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
48.1
-0.1
1.2
49.4
43.3
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
46.5
-0.2
1.6
53.54
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006701
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020762
6126692 - 6133655
6964