Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6132531_6133428_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6132531 - 6133428

Intron Length:

898

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACATTTC

5'SS Class:

major

3'SS Sequence:

TCTCTTTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCAAAT

U12 Branch Point Sequence:

TCTCTTTTTACA

Flanking Amino Acid:

ILLAASCDYFRGMFAGGLRE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

75.8

34.9

Major BPS

62.1

0.3

1.2

67.3

37.8

Major PPT

91.5

0.93

0.6

86.8

Minor 5ss

-0.8

3.2

61.2

43.7

Minor BPS

57.4

0.22

1.6

67.8

38.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006701

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020762

6126692 - 6133655

6964

ENSAPLT00000006960

6126022 - 6133655

7634