About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6142864_6148991_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6142864 - 6148991
Intron Length:
6128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
CCTCAGTTAATG
Flanking Amino Acid:
TNFRQKLVSQIDEAMRKAGV
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.9
37.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
96.8
1.05
0.5
96.1
13.2
Minor 5ss
30
-2.3
3.1
37.2
40.3
Minor BPS
44.7
-0.5
2.2
49.17
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027400
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032645
6142796 - 6149118
6323