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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6178523_6178814_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6178523 - 6178814
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
ACTCACTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
AAATCCTGTACT
Flanking Amino Acid:
ELLPRSVSEKWAAFIQENLL
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.5
41.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
73.5
0.53
0.8
70
35.5
Minor 5ss
35.3
-1.7
2.7
39.4
40.3
Minor BPS
57.3
0.31
1.8
73.96
42.1

Associated Gene:

Gene:
SMPD4
Ensembl Gene ID:
ENSAPLG00000007433
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007790
6178342 - 6191496
13155