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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6179511_6179922_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6179511 - 6179922
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTAAG
5'SS Class:
strong_major
3'SS Sequence:
AATCTTCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
AATATTTGAATC
Flanking Amino Acid:
HTASPLEEFKRVVIPRFVQQ
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.1
38.2
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
75.9
0.58
0.9
69.9
35.5
Minor 5ss
34
-1.8
2.9
41.6
45
Minor BPS
51.7
0.03
1.4
59.17
33.3

Associated Gene:

Gene:
SMPD4
Ensembl Gene ID:
ENSAPLG00000007433
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007790
6178342 - 6191496
13155