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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6186129_6186762_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6186129 - 6186762
Intron Length:
634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAATAT
U12 Branch Point Sequence:
TTTCCCTTAGCT
Flanking Amino Acid:
EIWRSETLLQIFVEMWLHHY
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
72.5
39.9
Major BPS
50.9
0.02
1.1
47.4
35.7
Major PPT
89.6
0.89
0.7
84.2
30
Minor 5ss
41.3
-1
2.8
49.6
41
Minor BPS
78.4
0.97
1.5
94
33.3

Associated Gene:

Gene:
SMPD4
Ensembl Gene ID:
ENSAPLG00000007433
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007790
6178342 - 6191496
13155