Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6186896_6188043_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6186896 - 6188043

Intron Length:

1148

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACGACT

5'SS Class:

major

3'SS Sequence:

TTTGTCATTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

CTTATATTAATT

Flanking Amino Acid:

PGGAIPSPTPRSPAVPFTSY

Intron Amino Acid Position:

220

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.66

1.1

76.1

39.5

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

83.8

0.76

0.8

77.5

35.6

Minor 5ss

40.4

-1.1

3.2

58.6

45.7

Minor BPS

61.2

0.43

1.6

77.29

39.4

Associated Gene:

Gene:

SMPD4

Ensembl Gene ID:

ENSAPLG00000007433

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007790

6178342 - 6191496

13155