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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6188804_6189408_R

Intron Information:

Intron Rank:
5
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
6188804 - 6189408
Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TCTATTCTTCCAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTTTTTTTAATC
Flanking Amino Acid:
SGGLGLNLALNPFEYYMFYF
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.7
0.06
1.2
57.8
41.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.2
0.79
0.8
77
37.1
Minor 5ss
96.3
1.56
0.7
91.7
17.5
Minor BPS
75.8
0.79
1.1
78.23
31.1

Associated Gene:

Gene:
SMPD4
Ensembl Gene ID:
ENSAPLG00000007433
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007790
6178342 - 6191496
13155