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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6189518_6190368_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6189518 - 6190368
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
CTCTGTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATCTCATTACTC
Flanking Amino Acid:
RYDFPVSYLPGPVKASIQEQ
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
71.6
33.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
79
0.65
0.8
76.9
31.9
Minor 5ss
32.8
-2
2.7
42.3
38.4
Minor BPS
53.4
0.09
1.9
65.6
40.4

Associated Gene:

Gene:
SMPD4
Ensembl Gene ID:
ENSAPLG00000007433
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007790
6178342 - 6191496
13155