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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6190445_6190589_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6190445 - 6190589
Intron Length:
145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTCA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TTCTTTCCAATG
Flanking Amino Acid:
YSVALDFLDPSGPMMKLVYK
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71
35.6
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
82
0.72
0.9
76.2
37.8
Minor 5ss
43.5
-0.7
2.9
56.9
47.3
Minor BPS
46.7
-0.3
1.9
55.24
41

Associated Gene:

Gene:
SMPD4
Ensembl Gene ID:
ENSAPLG00000007433
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007790
6178342 - 6191496
13155