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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6225824_6227337_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6225824 - 6227337
Intron Length:
1514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACGCAT
U12 Branch Point Sequence:
TGTTACGCATTT
Flanking Amino Acid:
VVFTIYNASTGTVEVINARE
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.8
38
Major BPS
62.2
0.3
1.3
71.6
36.4
Major PPT
86.6
0.82
0.7
80.5
31.5
Minor 5ss
36.6
-1.5
3.5
50.4
46.4
Minor BPS
41.9
-0.5
2.4
65.99
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008004
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008329
6225505 - 6233789
8285