About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6228167_6228703_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6228167 - 6228703
Intron Length:
537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TCTCCTTTAACA
Flanking Amino Acid:
PLFSKHGQNLCPLICDGQRF
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
80.1
0.68
0.8
76.5
30.7
Minor 5ss
38.9
-1.2
3
50.6
40.1
Minor BPS
78.2
0.88
1.1
80.59
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008004
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008329
6225505 - 6233789
8285