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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6228862_6229286_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6228862 - 6229286
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
TTTTCCACTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TGGTTTTCCACT
Flanking Amino Acid:
QALVEDLKKAGSVLSMEDLK
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.1
36.5
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
72.8
0.51
1
73.5
30.3
Minor 5ss
34.8
-1.7
3
41.6
39.5
Minor BPS
48.1
-0
1.9
67.99
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008004
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008329
6225505 - 6233789
8285