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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6229437_6229846_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6229437 - 6229846
Intron Length:
410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CATCTGTTAACC
Flanking Amino Acid:
VLLFILKILEGYKFSKASLA
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
79
0.65
0.7
77.2
24.8
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
52.3
0.05
2.1
64.38
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008004
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008329
6225505 - 6233789
8285