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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6232810_6233309_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6232810 - 6233309
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAG
U12 Branch Point Sequence:
GATTTGTTCACT
Flanking Amino Acid:
GARIISATAMAVINKLWFGY
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
68.2
0.45
1.5
77.7
37.1
Major PPT
80.5
0.69
0.9
74.9
34.7
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
48.8
-0
2.4
73.26
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008004
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008329
6225505 - 6233789
8285