Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6239093_6239970_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6239093 - 6239970

Intron Length:

878

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CTG|GCTTGAGGC

5'SS Class:

weak_major

3'SS Sequence:

AGAACAACTAAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TATAGAA

U12 Branch Point Sequence:

ACTTCTGCATTT

Flanking Amino Acid:

LEEQIEEVCLKRKHDTTRVT

Intron Amino Acid Position:

525

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.6

0.2

1.4

54.8

43.6

Major BPS

62.2

0.3

Major PPT

47.6

-0.1

1.1

39.5

37.5

Minor 5ss

-3.1

3.9

30.5

36.9

Minor BPS

42.6

-0.4

2.2

61.72

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008204

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041442

6238970 - 6243260

4291

ENSAPLT00000019364

6238970 - 6248993

10024

ENSAPLT00000008526

6238970 - 6248993

10024