Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6241281_6242133_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6241281 - 6242133

Intron Length:

853

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGCTGTA

5'SS Class:

major

3'SS Sequence:

CTGTCCCCGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTGCAT

U12 Branch Point Sequence:

CTGTCCCCGACA

Flanking Amino Acid:

PPSPANFIAPGKQPMSSMCP

Intron Amino Acid Position:

446

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

1.2

72.4

39.5

Major BPS

57.3

0.18

1.6

71.4

45.1

Major PPT

66.7

0.38

61.6

35.1

Minor 5ss

40.4

-1.1

3.5

57.6

47.1

Minor BPS

49.1

-0

63.48

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008204

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008526

6238970 - 6248993

10024

ENSAPLT00000041442

6238970 - 6243260

4291

ENSAPLT00000019364

6238970 - 6248993

10024