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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6246144_6247295_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6246144 - 6247295
Intron Length:
1152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGTAGA
5'SS Class:
major
3'SS Sequence:
CTTTCTCCATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ATCTTCTCAATC
Flanking Amino Acid:
ETSIENNPSLCEVFCRGGKI
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
70.7
41.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
75.2
0.57
0.8
75.3
28.5
Minor 5ss
33.8
-1.8
3
39
41.4
Minor BPS
62.2
0.36
1.5
68.35
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008204
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019364
6238970 - 6248993
10024
ENSAPLT00000008526
6238970 - 6248993
10024