About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6291126_6300796_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6291126 - 6300796
Intron Length:
9671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
GCCTGAAGACCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
TCAGCCTGAAGA
Flanking Amino Acid:
HGMPRRKSQVCLQKKVSQDS
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
72.3
37.7
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
49.9
-0
1.1
40.6
41.9
Minor 5ss
33.2
-1.9
3.2
40.6
40.8
Minor BPS
49.8
-0
1.9
60.79
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008662
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009007
6290215 - 6301981
11767