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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_630723_631613_R

Intron Information:

Intron Rank:
145906
Intron Class:
major
Intron Phase:
Intron Coordinates:
630723 - 631613
Intron Length:
891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TCTGTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTGTCAGCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.5
38.3
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
81.8
0.72
0.9
76.3
37.7
Minor 5ss
36.1
-1.6
3.2
50.7
39.7
Minor BPS
44.7
-0.3
2.4
70.92
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025902
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041717
630309 - 631788
1480