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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6321766_6323051_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6321766 - 6323051
Intron Length:
1286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCACCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTGCTCACAA
Flanking Amino Acid:
AGGEPPPPQPVECVQLKVPI
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.2
76.7
33.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.6
0.6
0.9
70.9
34.6
Minor 5ss
29.4
-2.4
2.9
36.5
40.5
Minor BPS
47.5
-0.1
2.3
68.84
43.3

Associated Gene:

Gene:
GUCD1
Ensembl Gene ID:
ENSAPLG00000008741
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009097
6321717 - 6327968
6252