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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6323137_6324576_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6323137 - 6324576
Intron Length:
1440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTCAC
5'SS Class:
major
3'SS Sequence:
ACTAACCCCATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
CCTGCCTTTACT
Flanking Amino Acid:
CGLACSRMVLQYLNHLDNDE
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
66.4
39.5
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
59.3
0.21
0.9
51.1
33
Minor 5ss
36.7
-1.5
3
50.3
40.1
Minor BPS
62.5
0.47
1.8
75.67
46.9

Associated Gene:

Gene:
GUCD1
Ensembl Gene ID:
ENSAPLG00000008741
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009097
6321717 - 6327968
6252