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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6324743_6325484_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6324743 - 6325484
Intron Length:
742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTATCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATCAT
U12 Branch Point Sequence:
AGTTCATAAATT
Flanking Amino Acid:
LGVDKGYKNQSFYRKHFDTE
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
1
92
25
Major BPS
75.6
0.64
1.1
76.2
37.5
Major PPT
78.9
0.65
0.9
70.2
40.4
Minor 5ss
38
-1.4
2.8
51.9
44.6
Minor BPS
57
0.3
1.9
76.48
40

Associated Gene:

Gene:
GUCD1
Ensembl Gene ID:
ENSAPLG00000008741
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009097
6321717 - 6327968
6252