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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6325577_6327145_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6325577 - 6327145
Intron Length:
1569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTGTAAATAAAC
Flanking Amino Acid:
AKACKVLVEKCTVTVQDIQK
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
76.8
34.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
83.7
0.76
0.7
77.2
24.9
Minor 5ss
47.6
-0.2
2.8
61.3
44.6
Minor BPS
46.1
-0.3
2.1
63.4
41.1

Associated Gene:

Gene:
GUCD1
Ensembl Gene ID:
ENSAPLG00000008741
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009097
6321717 - 6327968
6252