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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6327388_6327876_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6327388 - 6327876
Intron Length:
489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TCCTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTTACTAACA
Flanking Amino Acid:
IYYNNPAYADRTCCTSISNF
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
63.5
42.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
87.8
0.85
0.7
82.7
25.9
Minor 5ss
32.5
-2
2.7
41.4
38.2
Minor BPS
62.7
0.39
1.9
81.2
33.6

Associated Gene:

Gene:
GUCD1
Ensembl Gene ID:
ENSAPLG00000008741
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009097
6321717 - 6327968
6252