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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6331799_6334303_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6331799 - 6334303
Intron Length:
2505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCATTGCTAACA
Flanking Amino Acid:
RQVSDIWNFKMTGRYEMYAK
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
47.8
-0.1
2.3
64.21
42.2

Associated Gene:

Gene:
UPB1
Ensembl Gene ID:
ENSAPLG00000008782
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009148
6331715 - 6350584
18870