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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6334459_6345905_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6334459 - 6345905
Intron Length:
11447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTATTGTCA
5'SS Class:
weak_major
3'SS Sequence:
AAATTTCTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTTGCAAAATT
Flanking Amino Acid:
CFCQHALYQSSHHDLGHFYG
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.8
0.04
1.1
49.5
35
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
66.5
0.37
1.1
69.2
41
Minor 5ss
45.7
-0.4
3
61.9
44
Minor BPS
47.6
-0.1
2.3
73.42
43.7

Associated Gene:

Gene:
UPB1
Ensembl Gene ID:
ENSAPLG00000008782
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009148
6331715 - 6350584
18870