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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6347348_6348092_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6347348 - 6348092
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TCGTGCTTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTGTCTTGCATT
Flanking Amino Acid:
VNIVCFQEAWTMPFAFCTRE
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
80.7
33.7
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
78.2
0.63
0.9
69
41.9
Minor 5ss
37.5
-1.4
3
47.9
41.8
Minor BPS
54
0.21
1.9
76.18
41.3

Associated Gene:

Gene:
UPB1
Ensembl Gene ID:
ENSAPLG00000008782
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009148
6331715 - 6350584
18870