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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6349883_6350483_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6349883 - 6350483
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGCCG
5'SS Class:
major
3'SS Sequence:
TTCCTCAATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TCTTCCTCAATC
Flanking Amino Acid:
VKRILYGGEARKLNLPDAAL
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
57.9
46.7
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
74.9
0.56
0.9
66.8
38.3
Minor 5ss
29.7
-2.3
3.4
38.8
46.5
Minor BPS
73.1
0.7
1.5
78.52
37.5

Associated Gene:

Gene:
UPB1
Ensembl Gene ID:
ENSAPLG00000008782
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039705
6345086 - 6350584
5499
ENSAPLT00000009148
6331715 - 6350584
18870