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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6378696_6385450_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6378696 - 6385450
Intron Length:
6755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
ATCGGTGTAATT
Flanking Amino Acid:
DRIIAIRIPLRYNGLVTGSR
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
68
0.45
1
57.8
39
Major PPT
77.1
0.61
0.8
69
37.1
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
43
-0.4
2.3
60.82
44.2

Associated Gene:

Gene:
ADORA2A
Ensembl Gene ID:
ENSAPLG00000025116
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043229
6377735 - 6386327
8593