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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6433003_6435790_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6433003 - 6435790
Intron Length:
2788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGCC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCATTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTCTCCCTCATT
Flanking Amino Acid:
SVTPTTRSRIREERKDPLSA
Intron Amino Acid Position:
998

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
33.7
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
65.5
0.35
0.9
58.7
36
Minor 5ss
31
-2.2
3.4
42.5
44.5
Minor BPS
57.1
0.3
2.1
80.27
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009217
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009677
6416728 - 6466076
49349