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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6435948_6437686_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6435948 - 6437686
Intron Length:
1739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCATACCA
5'SS Class:
major
3'SS Sequence:
TTTTGCTGTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TTTTGCTGTATA
Flanking Amino Acid:
PAMESAKSISVSRRSSEEIK
Intron Amino Acid Position:
946

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.2
0.34
1.3
58.1
40.9
Major BPS
68
0.45
1
57.8
39
Major PPT
77.4
0.62
0.9
72.9
37.5
Minor 5ss
27.7
-2.6
2.8
32.7
41.4
Minor BPS
49.7
-0
2.2
71.86
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009217
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009677
6416728 - 6466076
49349