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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6437771_6439629_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6437771 - 6439629
Intron Length:
1859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTGTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTGTCTTCATTT
Flanking Amino Acid:
RPSYAEIPVQEHLLRTSSTS
Intron Amino Acid Position:
918

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
85.4
30.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.3
0.73
0.8
77.1
37.1
Minor 5ss
47.8
-0.2
2.5
68.9
41.7
Minor BPS
49.6
0.05
1.8
67.33
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009217
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009677
6416728 - 6466076
49349