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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6446899_6448680_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6446899 - 6448680
Intron Length:
1782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGCACA
5'SS Class:
major
3'SS Sequence:
ATATTGATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATGCCTTAAAA
Flanking Amino Acid:
TKELEEIKSRKQEEERGRVY
Intron Amino Acid Position:
802

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
67
38.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75
0.56
1
71.1
43.4
Minor 5ss
47.5
-0.2
2.4
58.5
40.2
Minor BPS
67.9
0.56
1.5
72.63
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009217
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009677
6416728 - 6466076
49349