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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6456245_6457713_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6456245 - 6457713
Intron Length:
1469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
ATCTATTTAGTT
Flanking Amino Acid:
ANRLQDAIAKVEDEYRVFQE
Intron Amino Acid Position:
650

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
90.7
0.92
0.7
89
27.2
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
53.4
0.19
1.7
70.92
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009217
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009677
6416728 - 6466076
49349