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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6459348_6460317_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6459348 - 6460317
Intron Length:
970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGGA
5'SS Class:
strong_major
3'SS Sequence:
AAAAAATATACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTCCTAACT
Flanking Amino Acid:
SLENKPKTVAGTSSTTKRST
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.8
35.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
54.2
0.09
1.1
44.4
44.8
Minor 5ss
31.4
-2.1
3.2
40.8
45.4
Minor BPS
67.3
0.62
1.7
82.79
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009217
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009677
6416728 - 6466076
49349