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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6460478_6465923_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6460478 - 6465923
Intron Length:
5446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAACT
5'SS Class:
major
3'SS Sequence:
GCCTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
CTGTCTTAAAGC
Flanking Amino Acid:
KTGTSASLLKTKSNDDLLAG
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
78.1
36.3
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
83
0.74
0.8
80.2
31.8
Minor 5ss
41.7
-0.9
2.9
59.3
44.8
Minor BPS
49.6
-0
2
61.04
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009217
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009677
6416728 - 6466076
49349