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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_64611_65259_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64611 - 65259
Intron Length:
649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
TATTCTGTAAAT
Flanking Amino Acid:
TDLLDVLGIDASNLTHYFSP
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
60.4
0.4
2.1
82.33
38.9

Associated Gene:

Gene:
BRI3BP
Ensembl Gene ID:
ENSAPLG00000009873
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010275
64192 - 66395
2204