About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6492415_6493437_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6492415 - 6493437
Intron Length:
1023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTGCCTGATTT
Flanking Amino Acid:
TFLFLLDHLKRVAERESINK
Intron Amino Acid Position:
1197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.3
0.75
0.7
77.4
31.3
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
52.2
0.15
1.9
72.32
45

Associated Gene:

Gene:
BCR
Ensembl Gene ID:
ENSAPLG00000009133
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009520
6491595 - 6586112
94518