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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6493544_6494206_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6493544 - 6494206
Intron Length:
663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTAGT
5'SS Class:
major
3'SS Sequence:
TTCTGTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTTTTATTATTT
Flanking Amino Acid:
ELYPNFAEGIALSDPVAKES
Intron Amino Acid Position:
1162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.5
41.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.8
0.71
0.8
77.2
31.6
Minor 5ss
36.2
-1.6
3.1
47.9
43
Minor BPS
56.6
0.29
1.8
77.46
39.2

Associated Gene:

Gene:
BCR
Ensembl Gene ID:
ENSAPLG00000009133
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009520
6491595 - 6586112
94518