Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6495032_6495793_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6495032 - 6495793

Intron Length:

762

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGCAGAAA

5'SS Class:

weak_major

3'SS Sequence:

AGCCATCTGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

AAGATTTAAAAT

Flanking Amino Acid:

FHKQTNDNEERSSCRFSQHK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.9

0.19

1.1

58.2

36.1

Major BPS

81.6

0.78

0.8

24.9

Major PPT

0.22

1.1

53.4

40.7

Minor 5ss

26.1

-2.7

3.2

29.2

37.7

Minor BPS

45.5

-0.2

1.7

56.83

39.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000031100

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041975

6494992 - 6496255

1264